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MRC Cognition and Brain Sciences Unit

Using cognitive theory and innovations in neuroscience to understand and improve mental wellbeing across the lifespan

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Various stuff about fMRI/EEG/MEG statistical analysis...


  • Up-to-date versions of many of the functions below can also be found on GitHub here: https://github.com/MRC-CBU/riksneurotools

    • Efficient fMRI design

  • How to design efficient fMRI experiments
  • Matlab function for calculating efficiency of fMRI GLMs: fMRI_GLM_efficiency.m

    • ANOVAs/GLM in SPM/Matlab

  • ANOVAs in SPM
  • Matlab function for N-way repeated measures ANOVAs: repanova.m
  • Matlab function for N-way mixed ANOVAs in SPM5/SPM8: batch_spm_anova.m
  • Matlab script for simulating pooled versus partitioned errors: check_pooled_error.m
  • Matlab function for generic GLM: glm.m
  • Comparing a single patient vs a Group (in SPM)

    • SPM stuff

  • SPM Course Slides from 2008
  • Some Example fMRI/EEG/MEG SPM5 batch scripts
  • Single-subject (1st-level) event-related fMRI analysis in SPM Manual and Data
  • Group-based (2nd-level) event-related fMRI analysis in SPM Manual and Data
  • Extract data for multiple ROIs from multiple datafiles: roi_extract.m
  • Example of Source Localisation of EEG and MEG data in SPM5: Manual and Data (~80MB)
  • Reading FIF MEG files into SPM5: click here for more info

    • Datasets

  • A multi-subject, multi-modal (T1, BOLD, DWI, EEG, MEG) dataset for methods development: click here for more info

    • Misc

  • A Matlab toolbox for Strutural Equation Modelling (developed by Nitin Williams): click here for more info
  • Matlab function for calculating NxN functional connectivity between all pairs of fMRI timeseries for N ROIs: rsfMRI_GLM
  • Matlab function for detecting artefacts in EEG/MEG data using ICA and (bootstrapped) temporal correlations with EOG/ECG and/or spatial correlations with standard template topographies: detect_ICA_artefacts
  • Matlab functions for computing multivariate Distance Correlation measure for fMRI functional connectivity
  • Matlab function for computing single-trial fMRI estimates fMRI_multitrial_GLMs.m using LSA or LSS (see Abdulrahman & Henson (2016)).

    • Use at own risk!

    calm

    Our research sites

    calm

    The Centre for Attention, Learning and Memory (CALM)

    c2ad

    The Cambridge Clinical Research Centre in Affective Disorders.

    cancan

    Cambridge Centre for Ageing and Neuroscience.

    Contact us

    15 Chaucer Road,
    Cambridge,
    CB2 7EF

    Email: info@mrc-cbu.cam.ac.uk
    Tel: (+44) (0)1223 766166

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